ProtocolOS
Capabilities

An execution assistant, not a filing cabinet

Live today: the three-column bench, pre-run setup, + Add Tool, protocol library, and analyzer. Workspace diagnostics, compute, and compliance are coming soon.

Interactive execution canvas

A Discord-inspired three-column bench: icon rail, # EXPERIMENT LOGS, and # PROTOCOL TEMPLATES beside the live step stream. Timers, notes, and the bench prompt bar stay on the run — not in a separate wiki.

  • · # EXPERIMENT LOGS for every versioned run
  • · # PROTOCOL TEMPLATES live in their own library, not mixed into logs
  • · Sticky AI action cards with Apply Changes to Step or Dismiss

Pre-run protocol setup

Dragging a template onto the canvas pauses on a setup modal before anyone pipets. Configure sample count, replicates, plate format, and pipetting overage so volumes are right before step 1.

  • · Sample count, replicates, and plate format
  • · Pipetting margins / overage baked into the mix
  • · Confirm once — every step inherits the scaled volumes

Dynamic media prep scaling

Change a batch volume and ingredient masses recalc on the card. LB broth, agar recipes, and master-mix overage stay internally consistent instead of living in a side spreadsheet.

  • · Target volume drives mass recalculation
  • · LB broth, no-salt recipes, and agar bases
  • · Master-mix +10% overage written back onto the step

Modular step tools

Every step has an inline + Add Tool control. Attach a countdown timer, a dilution calculator, or a media-prep card only when that run needs it — no clutter on steps that do not.

  • · + Add Timer for incubations and holds
  • · + Add Calculator for C₁V₁ = C₂V₂ and serial dilutions
  • · Tools travel with the step in the run log

Bench diagnostics & multi-model visionComing Soon

Photograph agarose gels, Western blots, plates, or hardware error screens in the Live Demo. Gemini 2.5 Pro inspects the image and recovery suggestions land on the failed step. The dedicated /diagnostics workspace is coming soon.

  • · Live Demo image diagnostic + hardware error-code decoder
  • · Workspace Diagnostics copilot — Coming soon
  • · SciCompute plate analytics — Coming soon

Dedicated protocol library

Assay templates live in their own library tab — qPCR, Western blot, biofilm, flow, ELISA, Bradford, TCID50, plaque — and ingest from published Materials & Methods text or paper screenshots into an executable DAG.

  • · Out-of-the-box assay templates, not mixed into run logs
  • · 1-click ingest from Methods text or figures
  • · Launch a compiled graph onto the notebook canvas

Open the interactive execution canvas →