Protocol Library

Templates live here — not mixed into run logs

The dedicated SOP repository is a first-class tab. Experiment logs stay on the canvas. Ingest published Materials & Methods or a paper screenshot and compile an executable DAG.

Text ingestion

Paste a Materials & Methods paragraph. One click compiles steps, timers, buffers, and dependencies into a runnable graph.

Figure ingestion

Drop a methods figure or paper screenshot. Gemini 2.5 Pro OCRs the columns; Claude emits the DAG you can launch on the bench.

Out-of-the-box assay library

qPCR, Western blot, biofilm formation, flow cytometry, ELISA, Bradford, TCID50, and plaque assays ship as templates — then live in the library tab, not the log stream.

PCR & qPCR

SYBR Green 20 µL / 40 cycles

3 steps · qPCR — SYBR Green

Western Blot

Wet transfer, 1.5 mm gel

4 steps · Western blot — wet transfer

Biofilm Formation

Crystal-violet static 96-well

6 steps · Crystal-violet biofilm

Flow Cytometry

CD69-PE on Jurkat

3 steps · Flow — surface CD69

ELISA (Direct, Indirect, Sandwich)

Coat, block, detect, TMB

4 steps · ELISA

Bradford & BCA Protein Assays

BSA standard curve, A595 / A562

3 steps · Protein quantification

TCID50 & Growth Curves

Endpoint dilution + kinetic OD / PFU

3 steps · TCID50 and growth curve

Plaque Assay

Agarose overlay, crystal-violet plaques

4 steps · Plaque assay

Open the workspace Protocol Library →